SMTL ID : 5zh6.1 (1 other biounit)

Crystal structure of Parvalbumin SPV-II of Mustelus griseus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.89, D.91, D.93, K.95, E.100 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.89, A:D.91, A:K.95, A:E.100, A:E.100 CA.2: 6 residues within 4Å: Chain A: D.50, D.52, S.54, F.56, E.58, E.61 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.50, A:D.52, A:S.54, A:F.56, A:E.58

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: H.25, K.26, A.87 4 PLIP interactions: 4 interactions with chain A Water bridges: A:A.107, A:A.107 Salt bridges: A:H.25, A:K.26 SO4.4: 1 residues within 4Å: Chain A: E.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.75 SO4.5: 3 residues within 4Å: Chain A: K.37, S.38, N.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.38, A:S.38 Salt bridges: A:K.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, R.Q. et al., Purification, Characterization, and Crystal Structure of Parvalbumins, the Major Allergens in Mustelus griseus. J. Agric. Food Chem. (2018)

Release Date

2018-08-01

Peptides

Parvalbumin SPV-II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Parvalbumin SPV-II

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