SMTL ID : 5zth.1

Crystal structure of spRlmCD with U1939loop RNA at 3.24 angstrom

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.24 Å

Oligo State

monomer

Ligands

1 x A- A- A- MUM- U- C- C- U: RNA (5'-R(P*AP*AP*AP*(MUM)P*UP*CP*CP*U)-3')(Non-covalent)

A-A-A-MUM-U-C-C-U.1: 32 residues within 4Å: Chain A: G.80, I.81, R.128, K.130, A.131, Q.132, F.146, F.147, R.148, K.149, N.150, S.151, H.152, I.162, Q.163, N.250, I.252, F.282, Q.284, V.285, D.382, P.383, R.385, K.386, I.407, C.409, F.437, T.440, H.441, H.442, Q.444 Ligands: SAH.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.282 Hydrogen bonds: A:Q.284, A:R.385, A:Q.444, A:Q.444 Salt bridges: A:K.130

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 16 residues within 4Å: Chain A: F.282, Q.284, Y.294, Y.313, S.314, T.318, I.319, E.334, L.335, I.336, D.360, T.361, A.362, D.382, P.384 Ligands: A-A-A-MUM-U-C-C-U.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.282 Hydrogen bonds: A:Y.294, A:Y.313, A:L.335, A:A.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, Y. et al., Unveiling the structural features that determine the dual methyltransferase activities of Streptococcus pneumoniae RlmCD. PLoS Pathog. (2018)

Release Date

2018-10-24

Peptides

Uncharacterized RNA methyltransferase SP_1029: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized RNA methyltransferase SP_1029

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