SMTL ID : 6a1e.1

Crystal structure of a synthase 1 from Santalum album in complex with ligand fps

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: W.174, K.509, E.513 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.509 SO4.2: 3 residues within 4Å: Chain A: N.146, K.153, N.154 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.146, A:N.154, A:N.154 Water bridges: A:E.155 SO4.3: 4 residues within 4Å: Chain A: D.181, R.184, R.501, K.505 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.505, A:K.505 Salt bridges: A:R.184, A:R.501, A:K.505 SO4.4: 3 residues within 4Å: Chain A: P.347, R.348, R.351 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.348, A:R.351 Water bridges: A:N.349 SO4.5: 3 residues within 4Å: Chain A: G.401, H.402, K.403 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.403 Salt bridges: A:H.402

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.6: 3 residues within 4Å: Chain A: R.184, T.185, R.501 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.184

1 x FPS: S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] TRIHYDROGEN THIODIPHOSPHATE(Non-covalent)

FPS.7: 14 residues within 4Å: Chain A: Q.284, S.285, Y.288, A.289, E.305, G.309, D.316, I.417, F.419, L.422, R.457, N.460, K.476, Y.536 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.288, A:Y.288, A:Y.288, A:Y.288, A:A.289, A:E.305, A:F.419, A:L.422 Hydrogen bonds: A:D.316, A:D.316, A:R.457, A:R.457, A:K.476 Water bridges: A:Y.409 Salt bridges: A:K.476

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.8: 7 residues within 4Å: Chain A: Y.167, F.171, T.188, L.211, D.212, L.213, P.214 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.212 Water bridges: A:R.184, A:T.188

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 4 residues within 4Å: Chain A: E.519, L.522, S.523, R.530 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.519, A:E.519, A:R.530 Water bridges: A:E.519, A:N.527, A:R.530 GOL.10: 7 residues within 4Å: Chain A: H.209, R.218, W.226, F.534, Q.537, W.548, Q.552 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.218, A:R.218, A:Y.222, A:Q.537 Water bridges: A:H.209, A:D.212, A:W.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, X. et al., Crystal structure of a synthase 1 from Santalum album in complex with ligand. To Be Published

Release Date

2019-06-12

Peptides

Sesquisabinene B synthase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sesquisabinene B synthase 1

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