SMTL ID : 6a1z.1

Crystal Structure of dimeric Kinesin-3 KIF13B

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: R.11, R.13, P.14, S.64, Q.104, T.105, G.106, G.108, K.109, S.110, Y.111, T.116 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.64, A:G.106, A:S.107, A:G.108, A:K.109, A:S.110, A:Y.111 Water bridges: A:T.105, A:K.109, A:S.110 Salt bridges: A:K.109 pi-Stacking: A:Y.111, A:Y.111 ADP.5: 13 residues within 4Å: Chain B: R.11, R.13, P.14, S.64, Q.104, T.105, G.106, G.108, K.109, S.110, Y.111, T.116 Ligands: MG.6 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:S.64, B:G.106, B:S.107, B:G.108, B:K.109, B:S.110, B:Y.111 Water bridges: B:T.105, B:K.109, B:S.110 Salt bridges: B:K.109 pi-Stacking: B:Y.111, B:Y.111

6 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.110, D.253 Ligands: ADP.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.110, H2O.1 MG.3: 5 residues within 4Å: Chain A: G.103, Q.104, T.329, V.330, T.343 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.329, A:T.343 MG.4: 4 residues within 4Å: Chain A: A.97, K.248, S.250, S.317 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:A.97, A:S.250 MG.6: 3 residues within 4Å: Chain B: S.110, D.253 Ligands: ADP.5 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.110, H2O.2 MG.7: 5 residues within 4Å: Chain B: G.103, Q.104, T.329, V.330, T.343 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.329, B:T.343 MG.8: 4 residues within 4Å: Chain B: A.97, K.248, S.250, S.317 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:A.97, B:S.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, J.Q. et al., Coiled-coil 1-mediated fastening of the neck and motor domains for kinesin-3 autoinhibition. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-11-21

Peptides

Kinesin family member 13B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Kinesin family member 13B