SMTL ID : 6a5m.1

Crystal structure of Arabidopsis thaliana SUVH6 in complex with SAM, form 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.290, C.306, C.332, C.336 Ligands: ZN.2, ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.290, A:C.306, A:C.332, A:C.336 ZN.2: 6 residues within 4Å: Chain A: C.296, C.332, C.338, C.342 Ligands: ZN.1, ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.296, A:C.332, A:C.338, A:C.342 ZN.3: 7 residues within 4Å: Chain A: C.290, C.292, C.296, C.304, C.338 Ligands: ZN.1, ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.290, A:C.292, A:C.296, A:C.304 ZN.4: 4 residues within 4Å: Chain A: C.457, C.515, C.517, C.522 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.457, A:C.515, A:C.517, A:C.522

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.5: 17 residues within 4Å: Chain A: R.363, G.364, W.365, E.400, Y.401, R.451, F.452, I.453, N.454, H.455, Y.496, K.513, L.514, C.515, F.516, C.517, L.526 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:W.365, A:W.365, A:Y.401, A:N.454, A:H.455, A:H.455, A:K.513, A:F.516

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-08-29

Peptides

Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6

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