SMTL ID : 6adg.1 (1 other biounit)

Crystal Structures of IDH1 R132H in complex with AG-881

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 21 residues within 4Å: Chain A: K.72, A.74, T.75, I.76, T.77, R.82, N.96, L.288, G.289, E.306, A.307, A.308, H.309, G.310, T.311, V.312, T.313, R.314, H.315, T.327, N.328 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:T.75, A:T.75, A:T.77, A:T.77, A:T.77, A:R.82, A:R.82, A:N.96, A:E.306, A:G.310, A:G.310, A:T.311, A:V.312, A:T.313, A:N.328, A:N.328 Salt bridges: A:R.314, A:H.315 NDP.5: 21 residues within 4Å: Chain B: K.72, A.74, T.75, I.76, T.77, R.82, N.96, G.289, E.306, A.307, A.308, H.309, G.310, T.311, V.312, T.313, R.314, H.315, T.327, N.328, D.375 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:K.72, B:T.75, B:T.77, B:T.77, B:R.82, B:R.82, B:E.306, B:G.310, B:G.310, B:T.311, B:V.312, B:N.328, B:N.328 Water bridges: B:T.313, B:R.314 Salt bridges: B:R.314, B:H.315

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: K.203, G.204, W.205 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Chain A: K.321 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:K.321

1 x 9UO: 6-(6-chloropyridin-2-yl)-N2,N4-bis[(2R)-1,1,1-trifluoropropan-2-yl]-1,3,5-triazine-2,4-diamine(Non-covalent)

9UO.4: 21 residues within 4Å: Chain A: W.124, V.255, A.258, M.259, W.267, D.273, V.276, Q.277, S.280, V.281 Chain B: W.124, I.251, V.255, M.259, W.267, Y.272, D.273, V.276, Q.277, S.280, V.281 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:I.251, B:V.281 Hydrogen bonds: B:Q.277, B:Q.277, A:Q.277, A:Q.277 Halogen bonds: A:D.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, R. et al., Crystal structures of pan-IDH inhibitor AG-881 in complex with mutant human IDH1 and IDH2. Biochem. Biophys. Res. Commun. (2018)

Release Date

2018-09-05

Peptides

Isocitrate dehydrogenase [NADP] cytoplasmic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Isocitrate dehydrogenase [NADP] cytoplasmic

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