SMTL ID : 6akw.1

Crystal structure of RNA dioxygenase bound with an inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.1: 11 residues within 4Å: Chain A: H.221, D.223, V.234, Y.285, H.297, V.299, R.306, S.308, T.310, R.312 Ligands: 8S3.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.299, A:T.310 Hydrogen bonds: A:R.86, A:N.195, A:Y.285, A:S.308, A:T.310 Salt bridges: A:H.297, A:R.306, A:R.312

1 x 8S3: 2-[[2,6-bis(chloranyl)-4-(3,5-dimethyl-1,2-oxazol-4-yl)phenyl]amino]benzoic acid(Non-covalent)

8S3.2: 16 residues within 4Å: Chain A: I.75, T.82, P.83, R.86, Y.96, Y.98, L.99, L.193, V.218, S.219, H.221, H.222, D.223, E.224, R.312 Ligands: AKG.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.75, A:T.82, A:Y.98, A:Y.98, A:L.99, A:L.193, A:H.221, A:E.224 Hydrogen bonds: A:Y.96, A:S.219, A:E.224, A:E.224 Salt bridges: A:K.206 Halogen bonds: A:S.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Y. et al., Small-Molecule Targeting of Oncogenic FTO Demethylase in Acute Myeloid Leukemia. Cancer Cell (2019)

Release Date

2019-05-29

Peptides

Alpha-ketoglutarate-dependent dioxygenase FTO: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase FTO