SMTL ID : 6al9.1

Crystal structure of chorismate mutase from Helicobacter pylori in complex with prephenate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

1 x PRE: PREPHENIC ACID(Non-covalent)

PRE.1: 13 residues within 4Å: Chain A: R.30, I.37, I.46, Y.47, C.48, R.51, E.52, I.55, F.80, S.83, R.84, Q.87 Chain B: R.13 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:R.51 Hydrogen bonds: A:C.48, A:S.83, A:R.84, A:Q.87 Water bridges: A:R.30 Salt bridges: A:R.30, B:R.13

1 x PYR: PYRUVIC ACID(Non-covalent)

PYR.2: 6 residues within 4Å: Chain A: R.13 Chain B: I.37, I.46, C.48, Q.87 Ligands: PHB.3 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:I.37 Hydrogen bonds: B:Q.87 Water bridges: B:R.51, A:R.13 Salt bridges: A:R.13

1 x PHB: P-HYDROXYBENZOIC ACID(Non-covalent)

PHB.3: 11 residues within 4Å: Chain A: I.16 Chain B: R.30, I.46, Y.47, C.48, R.51, E.52, I.55, S.83, Q.87 Ligands: PYR.2 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:R.51, B:E.52 Hydrogen bonds: B:I.46, B:C.48, B:E.52, B:S.83, B:S.83 Water bridges: B:R.51 Salt bridges: B:R.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, Y. et al., Crystal structure of chorismate mutase from Helicobacter pylori in complex with prephenate. To Be Published

Release Date

2018-11-07

Peptides

Chorismate mutase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Chorismate mutase