SMTL ID : 6aqg.4 (5 other biounits)

Crystal Structure of Lysyl-tRNA Synthetase from Mycobacterium ulcerans complexed with L-lysine and Cladosporin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 4 residues within 4Å: Chain A: L.204, G.250, G.251, F.252 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.204, A:F.252, A:F.252, A:F.252

1 x LYS: LYSINE(Non-covalent)

LYS.2: 15 residues within 4Å: Chain A: G.217, A.218, A.239, E.241, R.263, M.277, E.279, Y.281, T.426, Y.428, E.430, G.475, T.476, G.477 Ligands: KRS.3 13 PLIP interactions: 12 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:E.279, A:T.426, A:Y.428 Hydrogen bonds: A:G.217, A:E.241, A:E.279, A:E.279, A:Y.281, A:E.430, K.2 Water bridges: A:R.263, A:R.263 Salt bridges: A:R.263

1 x KRS: cladosporin(Non-covalent)

KRS.3: 15 residues within 4Å: Chain A: R.263, E.265, T.270, H.271, S.272, F.275, M.277, E.423, L.424, T.426, G.477, G.479, R.482, I.492 Ligands: LYS.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:H.271, A:T.426 Hydrogen bonds: A:E.265, A:E.265, A:T.270, A:S.272 Salt bridges: A:R.482 pi-Stacking: A:H.271, A:F.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dranow, D.M. et al., Crystal Structure of Lysyl-tRNA Synthetase from Mycobacterium ulcerans complexed with L-lysine and Cladosporin. to be published

Release Date

2017-08-30

Peptides

Lysine--tRNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Lysine--tRNA ligase

Related Entries With Identical Sequence