SMTL ID : 6ari.1 (1 other biounit)

Crystal structure of a dephospho-CoA kinase from Escherichia coli in complex with inhibitor CM078

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 8 residues within 4Å: Chain A: G.10, I.11, G.12, S.13, G.14, K.15, S.16, R.144 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.10, A:G.12, A:S.13, A:G.14, A:K.15, A:K.15, A:S.16 Water bridges: A:T.17 Salt bridges: A:K.15, A:K.15

1 x BQV: N-(methylsulfonyl)-3-{[(thiophen-2-yl)sulfanyl]methyl}benzamide(Non-covalent)

BQV.2: 12 residues within 4Å: Chain A: I.4, A.32, A.36, H.89, I.92, Q.93, T.96, Q.97, I.100, W.110, V.112, N.118 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.92, A:Q.93, A:Q.93, A:Q.97, A:I.100 Hydrogen bonds: A:N.118 Water bridges: A:D.33, A:A.36 pi-Stacking: A:W.110

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: A.19, N.20, A.23, V.29 No protein-ligand interaction detected (PLIP) EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.5: 2 residues within 4Å: Chain A: N.82, W.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.82 Water bridges: A:W.83 EDO.6: 3 residues within 4Å: Chain A: R.67, L.70, R.71 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.67, A:R.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayclin, S.J. et al., Crystal structure of a dephospho-CoA kinase from Escherichia coli in complex with inhibitor CM078. TO BE PUBLISHED

Release Date

2018-08-22

Peptides

Dephospho-CoA kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dephospho-CoA kinase

Related Entries With Identical Sequence