SMTL ID : 6aym.1

Crystal structure of Campylobacter jejuni 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

homo-dimer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: S.20, T.24, L.27, Y.44 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.20, A:T.24 EDO.2: 8 residues within 4Å: Chain A: L.105, Q.107, E.126, I.127, F.128, I.129, L.189 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.107, A:Q.107, A:E.126 EDO.3: 7 residues within 4Å: Chain A: A.39, N.40, K.59, N.64 Chain B: N.125, L.189, A.193 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.40, A:K.59, A:K.59, A:N.64, B:N.125 EDO.4: 6 residues within 4Å: Chain A: N.125, E.126, I.129 Chain B: N.40 Ligands: EDO.2, EDO.7 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.40, A:E.126, A:E.126 EDO.5: 7 residues within 4Å: Chain A: M.11, V.80, D.132, K.134, L.135, P.197, L.238 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.132 EDO.6: 4 residues within 4Å: Chain A: P.25, E.28, T.29, K.225 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.25, A:E.28, A:T.29, A:K.225 EDO.7: 8 residues within 4Å: Chain A: N.125, L.189, A.193 Chain B: A.39, N.40, K.59, N.64 Ligands: EDO.4 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.40, B:K.59, B:K.59, B:N.64, A:N.125 EDO.8: 7 residues within 4Å: Chain B: L.105, Q.107, E.126, I.127, F.128, I.129, L.189 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.107, B:Q.107, B:E.126 Water bridges: B:E.126 EDO.9: 5 residues within 4Å: Chain B: L.119, K.167, K.170, I.171, I.174 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.167 Water bridges: B:K.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ducati, R.G. et al., Transition-State Analogues of Campylobacter jejuni 5'-Methylthioadenosine Nucleosidase. ACS Chem. Biol. (2018)

Release Date

2018-09-12

Peptides

5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase

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