SMTL ID : 6b0r.2 (1 other biounit)

Zinc finger Domain of WT1(-KTS form) with M342R Mutation and 14+1mer Oligonucleotide with 3' Triplet TGG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.7, C.12, H.25, H.29 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.12, A:H.25, A:H.29 ZN.2: 4 residues within 4Å: Chain A: C.37, C.42, H.55, H.59 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.37, A:C.42, A:H.55, A:H.59 ZN.3: 4 residues within 4Å: Chain A: C.67, C.70, H.83, H.87 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.67, A:C.70, A:H.83, A:H.87 ZN.4: 4 residues within 4Å: Chain A: C.95, C.100, H.113, H.117 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.95, A:C.100, A:H.113, A:H.117

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 3 residues within 4Å: Chain A: P.4, F.5, M.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.6, A:M.6 EDO.6: 7 residues within 4Å: Chain A: R.48, D.50, Q.51, R.54 Chain B: A.9, G.10 Chain C: C.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, D. et al., Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res. (2018)

Release Date

2018-01-03

Peptides

Wilms tumor protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Wilms tumor protein

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