SMTL ID : 6b2o.1

LarE, a sulfur transferase involved in synthesis of the cofactor for lactate racemase, C176A variant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-hexamer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: A.176, S.180, R.181, R.212, R.214, R.259 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.180, A:S.180 Salt bridges: A:R.212, A:R.214, A:R.259 PO4.3: 5 residues within 4Å: Chain B: A.176, S.180, R.212, R.214, R.259 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.180, B:S.180 Salt bridges: B:R.212, B:R.214, B:R.259 PO4.5: 5 residues within 4Å: Chain C: A.176, S.180, R.212, R.214, R.259 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.180, C:S.180 Salt bridges: C:R.212, C:R.214, C:R.259 PO4.7: 5 residues within 4Å: Chain D: S.180, R.181, R.212, R.214, R.259 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:S.180 Salt bridges: D:R.212, D:R.214, D:R.259 PO4.8: 6 residues within 4Å: Chain E: A.176, S.180, R.181, R.212, R.214, R.259 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:S.180, E:S.180 Salt bridges: E:R.212, E:R.214, E:R.259 PO4.10: 6 residues within 4Å: Chain F: A.176, S.180, R.181, R.212, R.214, R.259 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:S.180 Salt bridges: F:R.212, F:R.214, F:R.259

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: S.26, G.28, I.29, D.30, S.31, G.123 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.26, A:S.26, A:G.28, A:D.30, A:S.31, A:S.31 Water bridges: A:I.29 SO4.4: 6 residues within 4Å: Chain B: S.26, G.28, I.29, D.30, S.31, T.32 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.26, B:G.28, B:D.30, B:D.30, B:S.31, B:T.32 Water bridges: B:D.30, B:G.123 SO4.6: 5 residues within 4Å: Chain C: S.26, G.28, I.29, D.30, S.31 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:S.26, C:S.26, C:S.26, C:G.28, C:D.30, C:D.30, C:S.31 SO4.9: 5 residues within 4Å: Chain E: S.26, G.28, D.30, S.31, G.123 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:S.26, E:G.28, E:G.28, E:D.30, E:D.30, E:S.31 SO4.11: 7 residues within 4Å: Chain F: S.26, G.28, I.29, D.30, S.31, T.32, G.123 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:S.26, F:G.28, F:D.30, F:S.31, F:S.31, F:T.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fellner, M. et al., Analysis of the Active Site Cysteine Residue of the Sacrificial Sulfur Insertase LarE from Lactobacillus plantarum. Biochemistry (2018)

Release Date

2018-09-05

Peptides

ATP-utilizing enzyme of the PP-loopsuperfamily: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

ATP-utilizing enzyme of the PP-loopsuperfamily