SMTL ID : 6b4h.1 (1 other biounit)

Crystal structure of Chaetomium thermophilum Gle1 CTD-Nup42 GBM-IP6 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

hetero-1-1-mer

Ligands

3 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 12 residues within 4Å: Chain B: H.10, K.14, R.17, K.18, K.116, S.120, K.163, I.166, W.190 Ligands: IHP.2, ZN.5, ZN.6 24 PLIP interactions: 24 interactions with chain B Water bridges: B:H.10, B:R.17, B:R.17, B:R.17, B:R.17, B:R.17, B:R.17, B:K.116, B:K.163, B:K.163, B:K.163, B:W.190, B:W.190 Salt bridges: B:H.10, B:H.10, B:K.14, B:K.14, B:K.14, B:R.17, B:K.116, B:K.116, B:K.116, B:K.163, B:K.163 IHP.2: 5 residues within 4Å: Chain B: R.42, S.120 Ligands: IHP.1, ZN.5, ZN.6 8 PLIP interactions: 8 interactions with chain B Water bridges: B:R.42, B:R.42, B:R.42, B:R.42, B:R.42, B:S.120 Salt bridges: B:R.42, B:R.42 IHP.3: 8 residues within 4Å: Chain B: K.57, Q.61, K.64, E.146, S.224, K.225, K.226 Ligands: MES.4 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.225 Salt bridges: B:K.57, B:K.57, B:K.64, B:K.225, B:K.226

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.4: 11 residues within 4Å: Chain B: Q.60, I.138, A.141, A.142, R.219, K.220, F.221, S.224, K.226, K.268 Ligands: IHP.3 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.220 Salt bridges: B:R.219

2 x ZN: ZINC ION(Non-functional Binders)

ZN.5: 2 residues within 4Å: Ligands: IHP.1, IHP.2 No protein-ligand interaction detected (PLIP) ZN.6: 2 residues within 4Å: Ligands: IHP.1, IHP.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, D.H. et al., Structural and functional analysis of mRNA export regulation by the nuclear pore complex. Nat Commun (2018)

Release Date

2018-06-20

Peptides

Nucleoporin AMO1: A
Nucleoporin GLE1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

Nucleoporin AMO1

Nucleoporin GLE1

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