SMTL ID : 6b84.1

Crystal structure of Myotoxin II from Bothrops moojeni

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: G.32, R.33, K.52 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.33 Water bridges: A:G.32, A:R.33, A:R.33 Salt bridges: A:R.33, A:K.52 SO4.2: 3 residues within 4Å: Chain A: D.38, A.39, R.42 5 PLIP interactions: 5 interactions with chain A Water bridges: A:A.39, A:A.39, A:R.42, A:R.42 Salt bridges: A:R.42 SO4.3: 4 residues within 4Å: Chain A: K.15, K.19, K.105, R.108 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.19 Salt bridges: A:K.15, A:K.19, A:K.105, A:R.108 SO4.4: 3 residues within 4Å: Chain B: G.32, R.33, K.52 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.33 Salt bridges: B:R.33, B:K.52 SO4.5: 1 residues within 4Å: Chain B: R.97 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.97, B:R.97 Salt bridges: B:R.97 SO4.6: 4 residues within 4Å: Chain B: K.15, K.19, K.105, R.108 5 PLIP interactions: 5 interactions with chain B Water bridges: B:K.15 Salt bridges: B:K.15, B:K.19, B:K.105, B:R.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Salvador, G.H.M. et al., Structural evidence for a fatty acid-independent myotoxic mechanism for a phospholipase A2-like toxin. Biochim Biophys Acta Proteins Proteom (2018)

Release Date

2018-10-03

Peptides

Basic phospholipase A2 homolog 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Basic phospholipase A2 homolog 2

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