- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.47 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 5 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 5 residues within 4Å:- Chain A: R.170, H.185
- Chain C: L.182, S.183, H.185
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain C- Salt bridges: A:R.170, A:H.185, C:H.185
- Water bridges: C:H.185
SO4.5: 8 residues within 4Å:- Chain A: L.69
- Chain B: N.163, S.166, R.170, W.187, V.269, P.271
- Ligands: SO4.11
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.163
- Salt bridges: B:R.170
SO4.10: 4 residues within 4Å:- Chain B: L.182, H.185
- Chain D: R.170, H.185
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain D- Water bridges: B:A.206
- Salt bridges: B:H.185, D:R.170, D:H.185
SO4.11: 7 residues within 4Å:- Chain B: R.170, H.185, V.269
- Chain D: L.182, S.183, H.185
- Ligands: SO4.5
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain D- Water bridges: B:R.268, B:V.269, D:H.185
- Salt bridges: B:R.170, D:H.185
SO4.12: 3 residues within 4Å:- Chain D: W.147, P.153, K.154
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.154
- 3 x LAC: LACTIC ACID(Non-covalent)
LAC.3: 9 residues within 4Å:- Chain A: Q.99, R.105, N.137, L.164, R.168, H.192, A.237, T.247
- Ligands: NAD.1
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:A.237, A:T.247
- Hydrogen bonds: A:R.105, A:N.137, A:H.192, A:T.247
- Salt bridges: A:R.105, A:R.168, A:H.192
LAC.6: 9 residues within 4Å:- Chain B: Q.99, R.105, N.137, L.164, R.168, H.192, A.237, T.247
- Ligands: NAD.4
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:T.247
- Hydrogen bonds: B:Q.99, B:R.105, B:N.137, B:H.192
- Water bridges: B:T.247
- Salt bridges: B:R.105, B:R.168, B:H.192
LAC.8: 9 residues within 4Å:- Chain C: Q.99, R.105, N.137, L.164, R.168, H.192, A.237, T.247
- Ligands: NAD.7
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:R.105, C:N.137, C:H.192, C:T.247
- Salt bridges: C:R.105, C:R.168, C:H.192
- 1 x D4J: (2S)-5-[(2-chlorophenyl)sulfanyl]-6'-(4-fluorophenoxy)-4-hydroxy-2-(thiophen-3-yl)-2,3-dihydro[2,2'-bipyridin]-6(1H)-one(Non-covalent)
D4J.13: 14 residues within 4Å:- Chain D: Q.99, N.137, D.165, R.168, H.192, G.193, D.194, V.233, V.234, A.237, Y.238, I.241, T.247
- Ligands: NAD.9
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:A.237, D:Y.238, D:I.241, D:I.241
- Hydrogen bonds: D:N.137, D:R.168, D:R.168, D:H.192, D:T.247
- pi-Stacking: D:Y.238
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wei, B. et al., Structure-guided optimization and in vivo activities of hydroxylactone and hydroxylactam Inhibitors of Human Lactate Dehydrogenase. To Be Published
- Release Date
- 2018-10-24
- Peptides
- L-lactate dehydrogenase A chain: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.47 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 3 x LAC: LACTIC ACID(Non-covalent)
- 1 x D4J: (2S)-5-[(2-chlorophenyl)sulfanyl]-6'-(4-fluorophenoxy)-4-hydroxy-2-(thiophen-3-yl)-2,3-dihydro[2,2'-bipyridin]-6(1H)-one(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wei, B. et al., Structure-guided optimization and in vivo activities of hydroxylactone and hydroxylactam Inhibitors of Human Lactate Dehydrogenase. To Be Published
- Release Date
- 2018-10-24
- Peptides
- L-lactate dehydrogenase A chain: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D