SMTL ID : 6bdz.1

ADAM10 Extracellular Domain Bound by the 11G2 Fab

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN.1: 10 residues within 4Å: Chain A: L.97, T.98, A.101 Chain B: R.38, K.43, E.46, W.47, N.60, T.62, L.63 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.101, B:K.43

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.2: 10 residues within 4Å: Chain C: Q.8, N.59, D.66, T.68, N.69, P.70, F.71, L.84, Q.88, V.98 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:L.84, C:Q.88

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: S.28, V.29, S.30, R.93, R.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.30, A:S.30 Salt bridges: A:R.93, A:R.94 SO4.4: 2 residues within 4Å: Chain A: R.18, S.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.77 Salt bridges: A:R.18

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 8 residues within 4Å: Chain C: I.240, C.241, G.242, N.243, M.245, E.247, E.250, D.253 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:I.240, C:E.247, C:E.250, C:D.253

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain C: H.164, E.165, H.168, H.174 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.164, C:H.168, C:H.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seegar, T.C.M. et al., Structural Basis for Regulated Proteolysis by the alpha-Secretase ADAM10. Cell (2017)

Release Date

2017-12-27

Peptides

11G2 Fab Light Chain: A
11G2 Fab Heavy Chain: B
Disintegrin and metalloproteinase domain-containing protein 10: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

11G2 Fab Light Chain

11G2 Fab Heavy Chain

Disintegrin and metalloproteinase domain-containing protein 10