SMTL ID : 6bhj.2 (1 other biounit)

Structure of HIV-1 Reverse Transcriptase Bound to a 38-mer Hairpin Template-Primer RNA-DNA Aptamer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 8 residues within 4Å: Chain B: V.37, R.94, E.95, K.98, E.415, E.429, W.430 Ligands: GOL.5 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:W.430, B:R.94, B:E.95, B:K.98, B:K.98, B:W.430, B:W.430

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.333, D.366, W.428, D.513 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.366, A:D.513 Salt bridges: A:K.333

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: L.94 Chain B: Q.39, W.40, P.41, N.153 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.39, B:N.153 GOL.5: 4 residues within 4Å: Chain B: W.40, E.415, W.418 Ligands: GLC-FRU.1 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.40

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 3 residues within 4Å: Chain A: D.445, G.446, D.551 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.445, A:D.551

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tuske, S. et al., Integrative Structural Biology Studies of HIV-1 Reverse Transcriptase Binding to a High-Affinity DNA Aptamer. Curr Res Struct Biol (2020)

Release Date

2018-10-31

Peptides

HIV-1 REVERSE TRANSCRIPTASE P66 subunit: A
HIV-1 REVERSE TRANSCRIPTASE P51 subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

HIV-1 REVERSE TRANSCRIPTASE P66 subunit

HIV-1 REVERSE TRANSCRIPTASE P51 subunit

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