SMTL ID : 6bjp.1

Apo form of the E124S mutant of betaine aldehyde dehydrogenase from Pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: T.26, I.27, D.93, V.180 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.26, A:I.27, A:D.93, A:V.180, H2O.2 K.7: 4 residues within 4Å: Chain B: T.26, I.27, D.93, V.180 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:T.26, B:I.27, B:D.93, B:D.93, B:V.180 K.8: 4 residues within 4Å: Chain C: T.26, I.27, D.93, V.180 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:I.27, C:D.93, C:D.93, C:V.180, H2O.18 K.15: 4 residues within 4Å: Chain D: T.26, I.27, D.93, V.180 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:T.26, D:I.27, D:D.93, D:V.180, H2O.26

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: G.339, Y.340, E.386 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.339 Water bridges: A:Y.340 EDO.3: 6 residues within 4Å: Chain A: Y.116, W.161, P.165, A.449, E.450, T.469 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.116 EDO.4: 4 residues within 4Å: Chain A: F.4, Q.7, L.89, K.187 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.7, A:Q.7, A:K.187 EDO.5: 1 residues within 4Å: Chain A: E.387 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.387 EDO.6: 4 residues within 4Å: Chain A: M.276, G.445, G.455, Y.456 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.276, A:G.445, A:Y.456 Water bridges: A:S.447 EDO.12: 5 residues within 4Å: Chain C: E.482, L.483 Chain D: R.269, Q.422, N.442 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:E.482, D:Q.422, D:N.442 EDO.13: 3 residues within 4Å: Chain C: F.4, Q.7, K.187 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.7, C:K.187 Water bridges: C:E.5 EDO.14: 4 residues within 4Å: Chain C: G.339, Y.340, T.382, E.386 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.339, C:E.386 Water bridges: C:Y.340

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 3 residues within 4Å: Chain C: L.307, L.352, C.353 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:L.352 Water bridges: C:Q.311 GOL.10: 1 residues within 4Å: Chain C: Q.311 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.311, C:Q.311 GOL.11: 9 residues within 4Å: Chain C: D.111, Y.115, W.161, A.449, K.457, Q.458, S.459, G.460, V.461 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.459

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carrizosa-Carbajal, E.I. et al., Structural role of Glu124 of betaine aldehyde dehydrogenase from Pseudomonas aeruginosa. To Be Published

Release Date

2018-11-14

Peptides

NAD/NADP-dependent betaine aldehyde dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
A

D
D

NAD/NADP-dependent betaine aldehyde dehydrogenase