SMTL ID : 6bms.2 (1 other biounit)

Palmitoyltransferase structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.131, C.134, H.144, T.150, C.151 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.131, A:C.134, A:H.144, A:C.151 ZN.2: 4 residues within 4Å: Chain A: C.145, C.148, H.158, C.165 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.145, A:C.148, A:C.165

2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.3: 3 residues within 4Å: Chain A: E.42, K.210, H.212 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.42 Salt bridges: A:H.212 LMT.7: 2 residues within 4Å: Chain A: A.247, F.248 No protein-ligand interaction detected (PLIP)

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.4: 16 residues within 4Å: Chain A: I.28, V.31, S.35, F.68, H.157, S.159, W.161, F.174, F.177, C.185, I.188, L.216, V.219, A.220, F.223, L.230 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.28, A:V.31, A:F.68, A:W.161, A:F.174, A:F.177, A:F.177, A:I.188, A:L.216, A:V.219, A:A.220, A:F.223, A:F.223, A:L.230 Salt bridges: A:H.157

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 4 residues within 4Å: Chain A: K.138, H.143, H.144 Ligands: PO4.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.144, A:H.144 Salt bridges: A:K.138, A:H.143 PO4.6: 4 residues within 4Å: Chain A: A.123, R.129, H.143 Ligands: PO4.5 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.129, A:K.138, A:H.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rana, M.S. et al., Fatty acyl recognition and transfer by an integral membraneS-acyltransferase. Science (2018)

Release Date

2018-01-10

Peptides

Palmitoyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Membrane

We predict this structure to be a membrane protein.
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Palmitoyltransferase

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