SMTL ID : 6bng.1

Structure of 2-dehydro-3-deoxyphosphooctonate aldolase from Acinetobacter baumannii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.71, S.72, S.76 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.72, A:S.72, A:S.76 Salt bridges: A:R.71 SO4.2: 5 residues within 4Å: Chain A: Q.121, P.123, A.124, K.146, R.176 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Q.121, A:A.124 Water bridges: A:N.70, A:N.70, A:F.125, A:K.146, A:Q.149, A:R.176, A:H.208, A:Q.211 Salt bridges: A:K.146, A:R.176, A:H.208 SO4.3: 2 residues within 4Å: Chain B: R.71, S.72 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.72, B:S.72, B:S.76 Salt bridges: B:R.71 SO4.4: 5 residues within 4Å: Chain B: Q.121, P.123, A.124, K.146, R.176 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.121, B:A.124 Water bridges: B:N.70, B:F.125 Salt bridges: B:K.146, B:R.176, B:H.208 SO4.5: 3 residues within 4Å: Chain C: R.71, S.72, S.76 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.72, C:S.72, C:S.76 Salt bridges: C:R.71 SO4.6: 5 residues within 4Å: Chain C: Q.121, P.123, A.124, K.146, R.176 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:Q.121, C:A.124 Water bridges: C:N.70, C:N.70, C:F.125, C:K.146, C:Q.149, C:R.176, C:H.208, C:Q.211 Salt bridges: C:K.146, C:R.176, C:H.208 SO4.7: 2 residues within 4Å: Chain D: R.71, S.72 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:S.72, D:S.72, D:S.76 Salt bridges: D:R.71 SO4.8: 5 residues within 4Å: Chain D: Q.121, P.123, A.124, K.146, R.176 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:Q.121, D:A.124 Water bridges: D:N.70, D:F.125 Salt bridges: D:K.146, D:R.176, D:H.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Structure of 2-dehydro-3-deoxyphosphooctonate aldolase from Acinetobacter baumannii. to be published

Release Date

2017-12-20

Peptides

2-dehydro-3-deoxyphosphooctonate aldolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

2-dehydro-3-deoxyphosphooctonate aldolase