SMTL ID : 6bsx.3 (3 other biounits)

CRYSTAL STRUCTURE OF RHEB IN COMPLEX WITH COMPOUND 1 AT 1.65A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: S.21 Ligands: GDP.3 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.21, H2O.1, H2O.2, H2O.2, H2O.3

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: E.29, V.33, Y.36 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.36

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 18 residues within 4Å: Chain A: R.16, S.17, V.18, G.19, K.20, S.21, S.22, F.32, V.33, D.34, N.120, K.121, D.123, L.124, S.150, A.151, K.152 Ligands: MG.1 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:S.17, A:V.18, A:G.19, A:K.20, A:S.21, A:S.22, A:S.22, A:D.34, A:Y.36, A:N.120, A:K.121, A:K.121, A:A.151 Water bridges: A:R.16, A:K.20, A:S.21, A:S.21, A:S.21, A:S.21, A:K.152, A:K.152 Salt bridges: A:K.20, A:D.123 pi-Stacking: A:F.32, A:F.32 pi-Cation interactions: A:K.121

1 x E7S: (5,6-dimethyl-1H-benzimidazol-2-yl)methanol(Non-covalent)

E7S.4: 10 residues within 4Å: Chain A: A.11, L.13, E.41, T.62, A.63, G.64, Q.65, F.71, Y.75, Y.82 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.11, A:L.13, A:T.62, A:F.71, A:F.71, A:Y.75, A:Y.82 Hydrogen bonds: A:E.41, A:A.63, A:G.64, A:Q.65 Water bridges: A:G.64 pi-Stacking: A:Y.75

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 2 residues within 4Å: Chain A: I.130, E.134 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.95, A:V.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mahoney, S.J. et al., A small molecule inhibitor of Rheb selectively targets mTORC1 signaling. Nat Commun (2018)

Release Date

2018-02-28

Peptides

GTP-binding protein Rheb: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

GTP-binding protein Rheb

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