SMTL ID : 6bxz.1

Crystal Structure of Pig Protocadherin-15 EC10-MAD12

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.21, D.70, E.72, D.113 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.21, A:D.70, A:E.72, A:D.113, H2O.4 CA.2: 6 residues within 4Å: Chain A: E.21, E.72, D.110, E.111, D.113, D.146 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.21, A:D.110, A:E.111, A:D.113, A:D.146 CA.3: 6 residues within 4Å: Chain A: N.112, H.114, D.144, D.146, Y.150, D.200 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.114, A:D.144, A:D.146, A:Y.150, A:D.200 CA.4: 4 residues within 4Å: Chain B: E.21, D.70, E.72, D.113 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.21, B:D.70, B:E.72, B:D.113, H2O.9 CA.5: 6 residues within 4Å: Chain B: E.21, E.72, D.110, E.111, D.113, D.146 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.21, B:D.110, B:E.111, B:D.113, B:D.146 CA.6: 6 residues within 4Å: Chain B: N.112, H.114, D.144, D.146, Y.150, D.200 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.114, B:D.144, B:D.146, B:Y.150, B:D.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De-la-Torre, P. et al., A Mechanically Weak Extracellular Membrane-Adjacent Domain Induces Dimerization of Protocadherin-15. Biophys. J. (2018)

Release Date

2018-11-28

Peptides

Protocadherin related 15: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

Protocadherin related 15