SMTL ID : 6bzt.1 (3 other biounits)

Crystal structure of halogenase PltM L111Y mutant in complex with FAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 33 residues within 4Å: Chain A: I.29, G.30, G.32, I.33, A.34, D.53, S.54, A.55, R.59, S.61, V.62, G.63, E.64, A.65, R.140, D.144, I.164, A.192, A.193, A.194, G.196, P.198, S.217, F.219, W.259, Q.341, F.345, P.348, S.351, G.353, L.354, T.357 Ligands: CL.2 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:V.62, A:F.219, A:F.345, A:F.345, A:P.348 Hydrogen bonds: A:G.32, A:A.34, A:S.54, A:S.54, A:A.55, A:R.59, A:R.59, A:S.61, A:S.61, A:V.62, A:E.64, A:A.65, A:A.65, A:R.140, A:R.140, A:G.196, A:Q.341, A:G.353, A:L.354 Water bridges: A:G.35, A:G.35, A:G.63 Salt bridges: A:R.59, A:R.140, A:R.140

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: F.345, D.347, P.348, S.351, R.352, G.353 Ligands: FAD.1 Ligand excluded by PLIP

4 x BR: BROMIDE ION(Non-covalent)

BR.3: 3 residues within 4Å: Chain A: Y.88, H.91, K.94 Ligand excluded by PLIP BR.4: 3 residues within 4Å: Chain A: H.411, N.493, H.496 Ligand excluded by PLIP BR.5: 2 residues within 4Å: Chain A: I.514, S.515 Ligand excluded by PLIP BR.6: 3 residues within 4Å: Chain A: F.410, H.411, N.414 Ligand excluded by PLIP

1 x CA: CALCIUM ION(Non-covalent)

CA.7: 1 residues within 4Å: Chain A: D.25 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.25, A:D.25, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mori, S. et al., Unusual substrate and halide versatility of phenolic halogenase PltM. Nat Commun (2019)

Release Date

2019-03-20

Peptides

Halogenase PltM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Halogenase PltM

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