SMTL ID : 6c13.1

CryoEM structure of mouse PCDH15-4EC-LHFPL5 complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

6 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 4 residues within 4Å: Chain A: T.188, P.218, I.252, N.253 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.2: 2 residues within 4Å: Chain A: N.272, N.273 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.3: 6 residues within 4Å: Chain A: E.326, N.364, Y.389, D.416, Y.417, K.419 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.419, A:K.419 NAG-NAG-BMA-MAN-MAN.4: 4 residues within 4Å: Chain B: T.188, P.218, I.252, N.253 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.5: 2 residues within 4Å: Chain B: N.272, N.273 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.6: 6 residues within 4Å: Chain B: E.326, N.364, Y.389, D.416, Y.417, K.419 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.419, B:K.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ge, J. et al., Structure of mouse protocadherin 15 of the stereocilia tip link in complex with LHFPL5. Elife (2018)

Release Date

2018-08-15

Peptides

Protocadherin-15: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protocadherin-15