SMTL ID : 6c6j.1

Structure of glycolipid aGSA[8,P5p] in complex with mouse CD1d

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.79 Å
Oligo State
hetero-1-1-mer
Ligands
1 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x PLM: PALMITIC ACID(Non-covalent)
1 x J76: (5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-(4-pentylphenyl)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)te trahydro-2H-pyran-2-yl]oxy}octanamide(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Wang, J. et al., A molecular switch in mouse CD1d modulates natural killer T cell activation by alpha-galactosylsphingamides. J.Biol.Chem. (2019)
Release Date
2019-01-30
Peptides
Antigen-presenting glycoprotein CD1d1: A
Beta-2-microglobulin: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B

Antigen-presenting glycoprotein CD1d1

Beta-2-microglobulin

Related Entries With Identical Sequence

1z5l.1 | 1z5l.2 | 1z5l.3 | 2akr.1 | 2akr.2 | 2akr.3 | 2akr.4 | 2gaz.1 | 2q7y.1 | 2q7y.2 | 3g08.1 | 3ma7.1 | 3ma7.2 | 3o8x.1 | 3o9w.1 | 3qux.1 | 3quy.1 | 3quz.1 | 3rzc.1 | 3t1f.1 | 3ta3.1 | 3tvm.1 | 3tvm.2 | 4elm.1 | 4elm.2 | 4irj.1 | 4irs.1 | 4y16.1 | 4y2d.1 | 4y2d.2  more...