SMTL ID : 6c8s.1

Loganic acid methyltransferase with SAH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 19 residues within 4Å: Chain A: P.21, M.22, Y.31, Q.38, G.77, C.78, S.79, N.83, N.113, D.114, H.115, G.140, S.141, F.142, Y.143, S.158, Y.159, A.160, W.163 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.31 Hydrogen bonds: A:P.21, A:P.21, A:Y.31, A:G.77, A:S.79, A:S.79, A:N.83, A:H.115, A:S.141, A:F.142, A:S.158 Water bridges: A:S.158 pi-Stacking: A:H.115, A:H.115, A:F.142 SAH.2: 20 residues within 4Å: Chain B: P.21, M.22, Y.31, Q.38, I.42, G.77, C.78, S.79, N.83, N.113, D.114, H.115, G.140, S.141, F.142, Y.143, S.158, Y.159, A.160, W.163 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:Y.31, B:S.79, B:N.83, B:H.115, B:S.141, B:F.142, B:S.158 Water bridges: B:M.22, B:M.22, B:S.141, B:S.158 pi-Stacking: B:H.115, B:F.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petronikolou, N. et al., Loganic Acid Methyltransferase: Insights into the Specificity of Methylation on an Iridoid Glycoside. Chembiochem (2018)

Release Date

2018-02-21

Peptides

Loganic acid O-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Loganic acid O-methyltransferase

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