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SMTL ID : 6c98.1 (1 other biounit)

Crystal structure of FcRn bound to UCB-84

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CYS: CYSTEINE(Non-covalent)

CYS.1:

6 residues within 4Å:

Chain A: S.37, P.47, C.48
Chain B: H.51, D.53
Ligands: ER7.2

6 PLIP interactions:

2 interactions with chain A, 1 Ligand-Ligand interactions, 3 interactions with chain B

Hydrogen bonds: A:S.37, B:D.53, B:D.53
Water bridges: A:Q.34, C.1, B:D.53

1 x ER7: 1-[7-(3-fluorophenyl)-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-6-yl]ethan-1-one(Non-covalent)

ER7.2:

15 residues within 4Å:

Chain A: W.29, P.32, Q.33, Q.34, P.228, N.229, S.230, G.232
Chain B: Y.26, S.52, D.53, Y.63, L.64, L.65
Ligands: CYS.1

5 PLIP interactions:

2 interactions with chain B, 3 interactions with chain A

Hydrophobic interactions: B:Y.63, B:L.65, A:W.29, A:P.228
Hydrogen bonds: A:Q.34

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:

8 residues within 4Å:

Chain B: I.7, Q.8, V.9, V.93, K.94, W.95, D.96, M.99

3 PLIP interactions:

3 interactions with chain B

Hydrogen bonds: B:V.9, B:D.96, B:D.96

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4:

3 residues within 4Å:

Chain B: R.12, H.13, F.22

2 PLIP interactions:

2 interactions with chain B

Hydrogen bonds: B:R.12, B:H.13

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Stoppler, D. et al., Insight into small molecule binding to the neonatal Fc receptor by X-ray crystallography and 100 kHz magic-angle-spinning NMR. PLoS Biol. (2018)

Release Date

2018-05-30

Peptides

IgG receptor FcRn large subunit p51: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

IgG receptor FcRn large subunit p51

Beta-2-microglobulin

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