SMTL ID : 6cl5.1 (1 other biounit)

Structure of P. aeruginosa R1 pyocin fiber PALES_06171 comprising C-terminal residues 323-701

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

homo-trimer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: H.244, H.246 Chain B: H.244, H.246 Chain C: H.244, H.246 6 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C, 2 interactions with chain B Metal complexes: A:H.244, A:H.246, C:H.244, C:H.246, B:H.244, B:H.246

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.295 Chain B: D.295 Chain C: D.295 No protein-ligand interaction detected (PLIP)

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: D.309, H.310, E.367, L.371, A.372, Q.373 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.310, A:Q.373, A:Q.373 NA.4: 6 residues within 4Å: Chain B: D.309, H.310, E.367, L.371, A.372, Q.373 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.310, B:L.371, B:Q.373 NA.5: 8 residues within 4Å: Chain C: D.309, H.310, E.367, Y.369, G.370, L.371, A.372, Q.373 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:H.310, C:E.367, C:Q.373

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buth, S.A. et al., Structure and Analysis of R1 and R2 Pyocin Receptor-Binding Fibers. Viruses (2018)

Release Date

2018-06-27

Peptides

Tail fiber protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Tail fiber protein

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