SMTL ID : 6cna.1

GluN1-GluN2B NMDA receptors with exon 5

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 4.60 Å

Oligo State

hetero-2-2-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.365, I.370 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 1 residues within 4Å: Chain A: N.200 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain B: P.654, N.655 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain C: N.365, I.370 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 1 residues within 4Å: Chain C: N.200 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 2 residues within 4Å: Chain D: P.654, N.655 No protein-ligand interaction detected (PLIP)

10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG.7: 3 residues within 4Å: Chain A: N.437, P.444, H.446 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.446 NAG.8: 2 residues within 4Å: Chain A: N.273, A.276 No protein-ligand interaction detected (PLIP) NAG.9: 1 residues within 4Å: Chain A: N.297 No protein-ligand interaction detected (PLIP) NAG.10: 1 residues within 4Å: Chain B: N.41 No protein-ligand interaction detected (PLIP) NAG.11: 1 residues within 4Å: Chain B: N.308 No protein-ligand interaction detected (PLIP) NAG.12: 3 residues within 4Å: Chain C: N.437, P.444, H.446 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.446 NAG.13: 2 residues within 4Å: Chain C: N.273, A.276 No protein-ligand interaction detected (PLIP) NAG.14: 1 residues within 4Å: Chain C: N.297 No protein-ligand interaction detected (PLIP) NAG.15: 1 residues within 4Å: Chain D: N.41 No protein-ligand interaction detected (PLIP) NAG.16: 1 residues within 4Å: Chain D: N.308 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Regan, M.C. et al., Structural Mechanism of Functional Modulation by Gene Splicing in NMDA Receptors. Neuron (2018)

Release Date

2018-10-03

Peptides

Glutamate receptor ionotropic, NMDA 1: AC
Glutamate receptor ionotropic, NMDA 2B: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Membrane

We predict this structure to be a membrane protein.
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Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2B