SMTL ID : 6cqc.4 (3 other biounits)

RNase P protein from Thermotoga maritima in complex with 1-(4-Fluorophenyl)-2-thiourea

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x 8P4: 1-(4-fluorophenyl)thiourea(Non-covalent)

8P4.1: 9 residues within 4Å: Chain A: K.52, K.54, F.55, I.88, P.89, R.90, K.91, S.94 Ligands: SO4.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.54, A:K.54, A:K.91, A:K.91 Hydrogen bonds: A:K.52, A:P.89 Water bridges: A:K.54, A:K.54

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: V.34, K.52, R.90, K.91 Ligands: 8P4.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.91 Water bridges: A:K.52, A:K.52, A:K.52, A:K.52, A:R.90, A:K.92 Salt bridges: A:K.52, A:R.90 SO4.3: 4 residues within 4Å: Chain A: T.59, R.60, K.63, F.97 3 PLIP interactions: 3 interactions with chain A Water bridges: A:T.59 Salt bridges: A:R.60, A:K.63 SO4.4: 3 residues within 4Å: Chain A: V.51, R.61, K.65 3 PLIP interactions: 3 interactions with chain A Water bridges: A:V.51 Salt bridges: A:R.61, A:K.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Madrigal-Carrillo, E.A. et al., Discovery of novel RNase P inhibitors via an activity-binding-structurepipeline. To Be Published

Release Date

2019-03-20

Peptides

Ribonuclease P protein component: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Ribonuclease P protein component

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