- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.24 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x K: POTASSIUM ION(Non-covalent)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x FBM: N-hydroxycyclohex-1-ene-1-carboxamide(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.8: 6 residues within 4Å:- Chain A: L.123, T.166, L.170, E.262, R.302
- Ligands: EDO.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.123, A:R.302
EDO.9: 5 residues within 4Å:- Chain A: L.123, T.124, G.125, R.302
- Ligands: EDO.8
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.302, A:R.302
EDO.10: 3 residues within 4Å:- Chain A: K.78, S.79, H.82
2 PLIP interactions:2 interactions with chain A- Water bridges: A:K.78, A:S.79
EDO.11: 7 residues within 4Å:- Chain A: H.29, P.30, F.149, L.278
- Ligands: CL.4, FBM.7, EDO.15
No protein-ligand interaction detected (PLIP)EDO.12: 9 residues within 4Å:- Chain A: K.238, A.273, R.274, G.275, D.276, G.279, G.280, F.281, Q.282
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.275, A:D.276, A:G.280
- Water bridges: A:G.279
EDO.13: 8 residues within 4Å:- Chain A: V.13, Y.14, D.15, R.17, R.54, I.55, P.56, A.57
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.15, A:R.17, A:R.54, A:A.57, A:A.57
- Water bridges: A:R.54
EDO.14: 6 residues within 4Å:- Chain A: R.274, P.285, E.286, E.318, M.322, P.333
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.318
- Water bridges: A:R.274
EDO.15: 7 residues within 4Å:- Chain A: N.23, H.29, S.97, I.98, F.99, F.149
- Ligands: EDO.11
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.29, A:I.98
- Water bridges: A:D.93, A:D.93, A:S.97
EDO.16: 3 residues within 4Å:- Chain A: E.44, R.47, S.50
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.50
- Water bridges: A:E.44, A:E.44, A:R.47
EDO.17: 6 residues within 4Å:- Chain A: K.72, I.76, L.91, E.94, Y.95, T.145
2 PLIP interactions:2 interactions with chain A- Water bridges: A:E.94, A:T.145
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Porter, N.J. et al., Entropy as a Driver of Selectivity for Inhibitor Binding to Histone Deacetylase 6. Biochemistry (2018)
- Release Date
- 2018-05-30
- Peptides
- Hdac6 protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
SMTL ID : 6csp.1 (1 other biounit)
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with cyclohexenylhydroxamate
Hdac6 protein
Related Entries With Identical Sequence
5eei.1 | 5eei.2 | 5eek.1 | 5eem.1 | 5eem.2 | 5een.1 | 5een.2 | 5ef7.1 | 5ef7.2 | 5ef8.1 | 5ef8.2 | 5efb.1 | 5efg.1 | 5efg.2 | 5efh.1 | 5efh.2 | 5efj.1 | 5w5k.1 | 5w5k.2 | 5w5k.3 | 5wgi.1 | 5wgk.1 | 5wgl.1 | 5wgl.2 | 5wgm.1 | 5wgm.2 | 5wgm.3 | 6cgp.1 | 6csp.2 | 6csq.1 more...less...6csq.2 | 6csr.1 | 6csr.2 | 6css.1 | 6css.2 | 6cw8.1 | 6cw8.2 | 6dvl.1 | 6dvl.2 | 6dvm.1 | 6dvm.2 | 6dvm.3 | 6dvm.4 | 6dvn.1 | 6dvn.2 | 6dvn.3 | 6dvn.4 | 6dvo.1 | 6mr5.1 | 6mr5.2 | 6pye.1 | 6pye.2 | 6v79.1 | 6v79.2 | 6v7a.1 | 6vnr.1 | 6vnr.2 | 6wsj.1 | 7jom.1 | 7jom.2 | 7u8z.1 | 7u8z.2 | 7u8z.3 | 7u8z.4 | 8cj7.1 | 8cj7.2 | 8cj7.3 | 8d98.1 | 8d98.2 | 8d99.1 | 8d99.2 | 8d9a.1 | 8d9a.2 | 8d9b.1 | 8d9b.2 | 8d9c.1 | 8d9c.2 | 8eqi.1 | 8eqi.2 | 8g1z.1 | 8g20.1 | 8g20.2 | 8gd4.1 | 8gd4.2 | 8tq0.1 | 8tq0.2