SMTL ID : 6cxh.1

Crystal structure of particulate methane monooxygenase from Methylomicrobium alcaliphilum 20Z

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-3-3-3-mer

Ligands

3 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.33, H.137, H.139 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.33, A:H.137, A:H.139 CU.4: 3 residues within 4Å: Chain D: H.33, H.137, H.139 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.33, D:H.137, D:H.139 CU.7: 3 residues within 4Å: Chain G: H.33, H.137, H.139 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:H.33, G:H.137, G:H.139

6 x CM5: 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE(Non-covalent)

CM5.2: 6 residues within 4Å: Chain A: M.203, V.204, C.207, R.208 Chain B: R.19, Y.23 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:M.203, A:V.204 Hydrogen bonds: A:R.208, B:R.19, B:Y.23 Salt bridges: B:R.19 CM5.3: 7 residues within 4Å: Chain B: E.13, K.16, V.17, T.20 Chain C: R.101, F.104, M.111 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:R.101, B:E.13 CM5.5: 6 residues within 4Å: Chain D: M.203, V.204, C.207, R.208 Chain E: R.19, Y.23 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain E Hydrophobic interactions: D:M.203, D:V.204 Hydrogen bonds: D:R.208, E:R.19, E:Y.23 Salt bridges: E:R.19 CM5.6: 7 residues within 4Å: Chain E: E.13, K.16, V.17, T.20 Chain F: R.101, F.104, M.111 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:R.101, E:E.13 CM5.8: 6 residues within 4Å: Chain G: M.203, V.204, C.207, R.208 Chain H: R.19, Y.23 6 PLIP interactions: 3 interactions with chain G, 3 interactions with chain H Hydrophobic interactions: G:M.203, G:V.204 Hydrogen bonds: G:R.208, H:R.19, H:Y.23 Salt bridges: H:R.19 CM5.9: 7 residues within 4Å: Chain H: E.13, K.16, V.17, T.20 Chain I: R.101, F.104, M.111 2 PLIP interactions: 1 interactions with chain I, 1 interactions with chain H Hydrogen bonds: I:R.101, H:E.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ro, S.Y. et al., From micelles to bicelles: Effect of the membrane on particulate methane monooxygenase activity. J. Biol. Chem. (2018)

Release Date

2018-05-16

Peptides

Particulate methane monooxygenase, B subunit: ADG
Particulate methane monooxygenase, A subunit: BEH
Particulate methane monooxygenase, C subunit: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

B
B

E
B

H
B

C
C

F
C

I
C

Membrane

We predict this structure to be a membrane protein.
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Particulate methane monooxygenase, B subunit

Particulate methane monooxygenase, A subunit

Particulate methane monooxygenase, C subunit

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