SMTL ID : 6cy3.1

Horse liver E267N alcohol dehydrogenase complex with 3'-dephosphocoenzyme A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.46, H.67, C.174 Ligands: COD.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.46, A:H.67, A:C.174 ZN.2: 5 residues within 4Å: Chain A: C.97, C.100, C.103, C.111, L.112 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:C.100, A:C.103, A:C.111 ZN.4: 4 residues within 4Å: Chain B: C.46, H.67, C.174 Ligands: COD.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.46, B:H.67, B:C.174 ZN.5: 5 residues within 4Å: Chain B: C.97, C.100, C.103, C.111, L.112 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.97, B:C.100, B:C.103, B:C.111

2 x COD: DEPHOSPHO COENZYME A(Non-covalent)

COD.3: 23 residues within 4Å: Chain A: C.46, R.47, S.48, H.51, H.67, F.93, C.174, G.199, L.200, G.201, G.202, V.203, D.223, I.224, K.228, V.268, I.269, R.271, T.274, V.292, G.293, V.294 Ligands: ZN.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.203 Hydrogen bonds: A:S.48, A:L.200, A:G.201, A:V.203, A:G.204, A:I.224, A:K.228, A:K.228, A:R.271, A:R.271, A:V.294 Salt bridges: A:R.47 COD.6: 23 residues within 4Å: Chain B: C.46, R.47, S.48, H.51, H.67, F.93, C.174, G.199, L.200, G.201, G.202, V.203, D.223, I.224, K.228, V.268, I.269, R.271, T.274, V.292, G.293, V.294 Ligands: ZN.4 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:V.203 Hydrogen bonds: B:S.48, B:L.200, B:G.201, B:V.203, B:G.204, B:I.224, B:K.228, B:K.228, B:R.271, B:R.271, B:V.294 Salt bridges: B:R.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y.H. et al., Substitutions of a buried glutamate residue hinder the conformational change in horse liver alcohol dehydrogenase and yield a surprising complex with endogenous 3'-Dephosphocoenzyme A. Arch. Biochem. Biophys. (2018)

Release Date

2018-04-18

Peptides

alcohol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

alcohol dehydrogenase