SMTL ID : 6d17.1

Crystal structure of KPC-2 complexed with compound 3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x VKE: [(6-oxo-2H,6H-[1,3]dioxolo[4,5-g][1]benzopyran-8-yl)methyl]phosphonic acid(Non-covalent)

VKE.1: 10 residues within 4Å: Chain A: S.66, P.100, W.101, S.126, N.128, R.216, K.230, T.231, G.232, T.233 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.101 Hydrogen bonds: A:S.66, A:S.126, A:N.128, A:R.216, A:R.216, A:K.230, A:T.231, A:T.233, A:T.233, A:T.233 Water bridges: A:T.231 Salt bridges: A:H.269 pi-Stacking: A:W.101, A:W.101

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Q.201, V.204, K.208, A.226, W.247 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.201, A:K.208, A:K.208 Water bridges: A:Q.201, A:K.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pemberton, O.A. et al., Heteroaryl Phosphonates as Noncovalent Inhibitors of Both Serine- and Metallocarbapenemases. J.Med.Chem. (2019)

Release Date

2019-04-17

Peptides

Carbapenem-hydrolyzing beta-lactamase KPC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbapenem-hydrolyzing beta-lactamase KPC

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