SMTL ID : 6d2c.1 (1 other biounit)

Structure of Ulvan lyase from Nonlaben Ulvanivorans- NLR48

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: R.117, Q.160, K.162, D.173, A.175, L.178, Y.281 Ligands: PO4.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.160, A:Q.160, A:Q.160, A:A.175, A:Y.281 Water bridges: A:R.117, A:K.162 Salt bridges: A:R.117, A:K.162 PO4.2: 6 residues within 4Å: Chain A: S.171, D.173, P.174, A.175, R.216 Ligands: PO4.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.171, A:D.173, A:A.175 Water bridges: A:K.162, A:S.171, A:S.171, A:R.216, A:R.216 Salt bridges: A:R.216

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: G.59, N.61, D.79, S.81, A.84, N.85 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.59, A:D.79, A:D.79, A:S.81, A:A.84

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: S.123, Q.126 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.123, A:S.123, A:Q.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ulaganathan, T. et al., Structural and functional characterization of PL28 family ulvan lyase NLR48 fromNonlabens ulvanivorans. J. Biol. Chem. (2018)

Release Date

2018-06-06

Peptides

Ulvan lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ulvan lyase

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