SMTL ID : 6d51.1

Crystal structure of L,D-transpeptidase 3 from Mycobacterium tuberculosis in complex with a faropenem-derived adduct

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x ACE: ACETYL GROUP(Non-functional Binders)

ACE.1: 5 residues within 4Å: Chain A: M.184, Y.199, H.233, G.234, C.235 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.233, A:C.235

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: V.37, D.251 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:V.37, A:D.251, H2O.3, H2O.5, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Libreros-Zuniga, G.A. et al., Structural Basis for the Interaction and Processing of beta-Lactam Antibiotics by l,d-Transpeptidase 3 (LdtMt3) from Mycobacterium tuberculosis. ACS Infect Dis (2019)

Release Date

2019-02-27

Peptides

Probable L,D-transpeptidase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable L,D-transpeptidase 3