SMTL ID : 6day.1 (1 other biounit)

Xanthomonas albilineans Dihydropteroate synthase with 4-aminobenzoic acid at 1.65 A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-tetramer

Ligands

8 x PAB: 4-AMINOBENZOIC ACID(Non-covalent)(Covalent)

PAB.1: 10 residues within 4Å: Chain A: V.242, A.243, V.246, A.267 Chain B: V.242, A.243, V.246 Chain D: S.34, G.36, G.37 7 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: B:V.242, B:A.243, A:V.242, A:A.267 Hydrogen bonds: D:S.34, D:G.36, D:G.37 PAB.2: 8 residues within 4Å: Chain A: A.47, H.48 Chain D: T.72, A.73, V.74, P.75, E.78, R.82 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:A.73 Water bridges: D:T.72 Hydrophobic interactions: A:A.47 Salt bridges: A:H.48 PAB.5: 8 residues within 4Å: Chain B: T.67, R.68, G.194, F.195, K.226, R.227 Ligands: SO4.8, SO4.9 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:R.68, B:F.195, B:K.226 Hydrogen bonds: B:T.67, B:G.194, B:R.227 Water bridges: B:N.202, B:S.228 pi-Cation interactions: B:K.226 PAB.6: 9 residues within 4Å: Chain B: T.72, A.73, V.74, P.75, E.78, R.82 Chain C: A.47, H.48, R.51 10 PLIP interactions: 4 interactions with chain B, 6 interactions with chain C Hydrophobic interactions: B:V.74, B:E.78, C:A.47 Hydrogen bonds: B:T.72, C:R.51 Water bridges: B:E.78, C:A.44, C:H.48 Salt bridges: C:H.48 pi-Cation interactions: C:R.51 PAB.7: 3 residues within 4Å: Chain B: A.47, H.48, R.51 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:A.47, B:R.51 Water bridges: B:H.48 Salt bridges: B:H.48 PAB.10: 11 residues within 4Å: Chain B: S.34, G.36, G.37 Chain C: V.242, A.243, V.246, A.267 Chain D: V.242, A.243, V.246, A.267 10 PLIP interactions: 4 interactions with chain D, 3 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: D:V.242, D:A.243, D:A.267, C:V.242, C:A.267 Water bridges: D:A.247, C:A.247 Hydrogen bonds: B:S.34, B:G.36, B:G.37 PAB.14: 7 residues within 4Å: Chain D: T.67, R.68, G.194, F.195, K.226, R.227 Ligands: SO4.17 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:F.195, D:K.226 Hydrogen bonds: D:T.67, D:T.67, D:G.194, D:R.227, D:R.227 Water bridges: D:K.226, D:S.228 Salt bridges: D:K.226 pi-Cation interactions: D:K.226 PAB.16: 3 residues within 4Å: Chain D: A.47, H.48, R.51 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:A.47, D:R.51 Water bridges: D:H.48 Salt bridges: D:H.48, D:R.51

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: I.25, N.27, R.261, H.263 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.27 Water bridges: A:S.224, A:K.226, A:R.261 Salt bridges: A:R.261, A:H.263 SO4.4: 4 residues within 4Å: Chain A: G.194, F.195, K.226, R.227 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.195, A:R.227 Water bridges: A:S.224, A:K.226 SO4.8: 5 residues within 4Å: Chain B: I.25, N.27, R.261, H.263 Ligands: PAB.5 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.27 Water bridges: B:R.261 Salt bridges: B:R.261, B:H.263 SO4.9: 3 residues within 4Å: Chain B: R.227, R.241 Ligands: PAB.5 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.241 SO4.13: 4 residues within 4Å: Chain C: G.194, F.195, K.226, R.227 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:F.195, C:R.227 SO4.17: 6 residues within 4Å: Chain D: I.25, N.27, K.226, R.261, H.263 Ligands: PAB.14 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:N.27, D:N.27 Water bridges: D:K.226, D:K.226, D:K.226, D:K.226 Salt bridges: D:K.226, D:R.261, D:H.263

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 4 residues within 4Å: Chain C: I.25, N.27, R.261, H.263 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:N.27, C:N.27, C:R.261, C:R.261, C:H.263 GOL.12: 5 residues within 4Å: Chain C: R.19, P.20, D.58, L.272, T.273 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.19, C:D.58, C:T.273, C:Q.276 GOL.15: 6 residues within 4Å: Chain D: R.19, P.20, R.21, D.58, V.269, T.273 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:P.20, D:D.58, D:T.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oliveira, A.A. et al., Xanthomonas albilineans Dihydropteroate synthase with 4-aminobenzoic acid. To Be Published

Release Date

2018-06-06

Peptides

Dihydropteroate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Dihydropteroate synthase

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