SMTL ID : 6db6.1

Crystal structure of anti-HIV-1 V3 Fab 311-11D in complex with a HIV-1 gp120 V3 peptide from MN strain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- FCA: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-D-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-FCA.1: 5 residues within 4Å: Chain A: N.28, T.30, T.31, D.102 Chain C: R.13 2 PLIP interactions: 2 interactions with chain C Water bridges: C:R.13, C:R.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chan, K.W. et al., Structural Comparison of Human Anti-HIV-1 gp120 V3 Monoclonal Antibodies of the Same Gene Usage Induced by Vaccination and Chronic Infection. J. Virol. (2018)

Release Date

2018-07-11

Peptides

Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab heavy chain: A
Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab light chain: B
HIV-1 gp120 V3 peptide from MN strain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
P

Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab heavy chain

Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab light chain

HIV-1 gp120 V3 peptide from MN strain

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