SMTL ID : 6dfx.1 (1 other biounit)

human diabetogenic TCR T1D3 in complex with DQ8-p8E9E peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.119, E.167, W.169 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: I.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., How C-terminal additions to insulin B-chain fragments create superagonists for T cells in mouse and human type 1 diabetes. Sci Immunol (2019)

Release Date

2019-04-17

Peptides

MHC class II HLA-DQ-alpha chain: A
MHC class II antigen: B
T1D3 alpha chain: C
T1D3 beta chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
H

MHC class II HLA-DQ-alpha chain

MHC class II antigen

T1D3 alpha chain

T1D3 beta chain

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