SMTL ID : 6dgi.1

The crystal structure of D-alanyl-alanine synthetase A from Vibrio cholerae O1 biovar eltor str. N16961

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: E.19, G.87, E.91, F.118, G.169, S.170, N.299 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.19, A:G.87, A:S.170 Water bridges: A:E.91, A:S.117 GOL.3: 4 residues within 4Å: Chain B: G.93, S.97, P.111, A.115 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.97, B:S.97, B:P.111

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: E.207 Chain B: T.233, Y.235 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain A: Y.235 Chain B: D.284 No protein-ligand interaction detected (PLIP)

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 6 residues within 4Å: Chain B: E.19, G.87, E.91, G.169, E.297, N.299 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.87, B:G.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of D-alanyl-alanine synthetase A from Vibrio cholerae O1 biovar eltor str. N16961. To Be Published

Release Date

2018-05-30

Peptides

D-alanine--D-alanine ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

D-alanine--D-alanine ligase