SMTL ID : 6di6.1

Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 11 residues within 4Å: Chain A: P.23, C.25, C.106, I.109, C.123, F.125, Y.159, T.160, C.163, P.189 Ligands: MPD.2 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.25, A:C.106, A:C.123, A:C.163

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 9 residues within 4Å: Chain A: T.160, T.164, F.167, A.187, H.188, L.191, Y.192, R.195 Ligands: SF4.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.167, A:A.187, A:Y.192 Hydrogen bonds: A:H.188, A:H.188, A:R.195 MPD.3: 6 residues within 4Å: Chain A: W.14, E.16, S.19, M.30, E.31, K.34 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.14, A:K.34 Hydrogen bonds: A:S.19, A:S.19, A:E.31, A:K.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Brien, E. et al., Yeast require redox switching in DNA primase. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-12-12

Peptides

DNA primase large subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA primase large subunit