SMTL ID : 6di7.1

Vps1 GTPase-BSE fusion complexed with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 19 residues within 4Å: Chain A: Q.72, S.73, S.74, G.75, K.76, S.77, S.78, R.91, T.259, K.260, D.262, L.263, V.289, N.290, R.291, G.292, Q.293, I.296 Ligands: MG.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:S.71, A:S.73, A:S.74, A:G.75, A:K.76, A:S.77, A:S.78, A:S.78, A:K.260, A:K.260, A:N.290, A:N.290, A:Q.293 Water bridges: A:S.73, A:S.73, A:K.76, A:K.76, A:D.262, A:G.292 Salt bridges: A:K.76, A:R.91, A:D.262

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: K.76, S.77, T.97, D.190 Ligands: GDP.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.77, A:T.97, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Varlakhanova, N.V. et al., Structures of the fungal dynamin-related protein Vps1 reveal a unique, open helical architecture. J. Cell Biol. (2018)

Release Date

2018-08-22

Peptides

Putative sorting protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative sorting protein