SMTL ID : 6dij.4 (3 other biounits)

Structure of the EVA71 strain 11316 capsid

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 16 residues within 4Å: Chain A: I.111, D.112, I.113, T.114, F.131, F.135, F.137, F.155, P.177, V.190, V.192, M.195, W.203, N.228, F.233, A.275 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.111, A:I.111, A:F.131, A:F.135, A:F.137, A:F.155, A:F.155, A:V.190, A:V.192, A:V.192, A:W.203, A:W.203, A:F.233 Hydrogen bonds: A:I.111, A:I.113, A:T.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, L. et al., Viral engagement with host (co-)receptors blocked by a novel class of tryptophan dendrimers that targets the 5-fold-axis of the enterovirus-A71 capsid. Plos Pathog. (2019)

Release Date

2019-05-01

Peptides

VP1: A
VP2: B
VP3: C
VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

VP1

VP2

VP3

VP4

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