SMTL ID : 6din.1

High resolutionstructure of apo dTDP-4-dehydrorhamnose 3,5-epimerase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.58, S.127, E.128 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.128 Water bridges: A:Y.129 Salt bridges: A:R.58 SO4.2: 7 residues within 4Å: Chain A: Q.35, V.46, S.47, F.48 Chain B: S.47, F.48 Ligands: SO4.6 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.35, A:F.48, B:F.48 Water bridges: B:Q.35, B:Q.35 SO4.3: 1 residues within 4Å: Chain A: R.58 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.58 Salt bridges: A:R.58 SO4.4: 2 residues within 4Å: Chain A: R.69, Q.70 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.70 Water bridges: A:A.71, A:A.71 SO4.5: 3 residues within 4Å: Chain B: R.58, S.127, E.128 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.128 Water bridges: B:Y.129 Salt bridges: B:R.58 SO4.6: 7 residues within 4Å: Chain A: S.47, F.48 Chain B: Q.35, V.46, S.47, F.48 Ligands: SO4.2 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:F.48, B:Q.35, B:F.48 Water bridges: A:Q.35, A:Q.35 SO4.7: 1 residues within 4Å: Chain B: R.58 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.128 Water bridges: B:R.58 Salt bridges: B:R.58 SO4.8: 2 residues within 4Å: Chain B: R.69, Q.70 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.70 Water bridges: B:A.71, B:A.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., High resolutionstructure of apo dTDP-4-dehydrorhamnose 3,5-epimerase. To Be Published

Release Date

2018-05-30

Peptides

dTDP-4-dehydrorhamnose 3,5-epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

dTDP-4-dehydrorhamnose 3,5-epimerase