SMTL ID : 6dli.1

Crystal structure of glutamate racemase from Thermus thermophilus in complex with Beta-chloro-D-alanine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

4 x C2N: 3-chloro-D-alanine(Non-covalent)

C2N.1: 9 residues within 4Å: Chain A: D.33, S.34, Y.65, C.96, N.97, T.98, T.137, C.197, T.198 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.34, A:N.97, A:N.97, A:T.98, A:T.198, A:T.198 C2N.3: 11 residues within 4Å: Chain B: D.33, S.34, P.64, Y.65, G.66, C.96, N.97, T.98, T.137, C.197, T.198 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.34, B:N.97, B:T.98, B:T.98, B:T.198, B:T.198 C2N.4: 11 residues within 4Å: Chain C: D.33, S.34, P.64, Y.65, G.66, C.96, N.97, T.98, T.137, C.197, T.198 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:S.34, C:N.97, C:T.98, C:T.98, C:T.137, C:T.198 C2N.6: 11 residues within 4Å: Chain D: D.33, S.34, P.64, Y.65, G.66, C.96, N.97, T.98, T.137, C.197, T.198 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:S.34, D:N.97, D:N.97, D:T.98, D:T.98, D:T.98, D:T.198

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: R.127, R.148, Y.149, D.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.127, A:R.127 GOL.5: 3 residues within 4Å: Chain B: D.110 Chain C: V.89, V.113 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.110 GOL.7: 5 residues within 4Å: Chain A: D.110 Chain D: D.24, L.85, V.89, V.113 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cooling, G.T. et al., Crystal structure of glutamate racemase from Thermus Thermophilus in complex with Beta-chloro-D-alanine. To be Published

Release Date

2019-06-05

Peptides

Glutamate racemase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Glutamate racemase

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