SMTL ID : 6dqg.1

Human glutamate dehydrogenase, H454Y mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-hexamer

Ligands

15 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: R.454 Chain B: S.388 Ligand excluded by PLIP PO4.2: 2 residues within 4Å: Chain B: H.204, K.441 Ligand excluded by PLIP PO4.3: 4 residues within 4Å: Chain B: R.256, Y.257, R.260, Y.445 Ligand excluded by PLIP PO4.4: 7 residues within 4Å: Chain C: S.208, R.212, R.256, Y.257, R.260, K.441, Y.445 Ligand excluded by PLIP PO4.5: 3 residues within 4Å: Chain C: H.204, K.382, S.388 Ligand excluded by PLIP PO4.6: 3 residues within 4Å: Chain D: I.198, H.204, G.205 Ligand excluded by PLIP PO4.7: 5 residues within 4Å: Chain D: R.212, R.256, Y.257, R.260, Y.445 Ligand excluded by PLIP PO4.8: 4 residues within 4Å: Chain C: D.114, R.454 Chain D: S.388, R.391 Ligand excluded by PLIP PO4.9: 2 residues within 4Å: Chain E: H.204, G.205 Ligand excluded by PLIP PO4.10: 6 residues within 4Å: Chain E: R.212, R.256, Y.257, R.260, K.441, Y.445 Ligand excluded by PLIP PO4.11: 4 residues within 4Å: Chain D: D.114, R.454 Chain E: S.388, R.391 Ligand excluded by PLIP PO4.12: 4 residues within 4Å: Chain F: H.204, G.205, I.207, K.441 Ligand excluded by PLIP PO4.13: 7 residues within 4Å: Chain F: S.208, R.212, R.256, Y.257, R.260, K.441, Y.445 Ligand excluded by PLIP PO4.14: 4 residues within 4Å: Chain B: R.454 Chain F: H.204, K.382, S.388 Ligand excluded by PLIP PO4.15: 4 residues within 4Å: Chain A: S.388, R.391 Chain F: D.114, R.454 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nassar, O.M. et al., Glutamate dehydrogenase: Structure of a hyperinsulinism mutant, corrections to the atomic model, and insights into a regulatory site. Proteins (2019)

Release Date

2018-06-20

Peptides

Glutamate dehydrogenase 1, mitochondrial: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Glutamate dehydrogenase 1, mitochondrial