SMTL ID : 6dtn.1

The structure of NTMT1 in complex with compound DC100-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x 6D6- PRO- PRO- LYS- ARG- ILE- ALA- NH2: (6D6)PPKRIA(NH2), DC100-1(Non-covalent)

6D6-PRO-PRO-LYS-ARG-ILE-ALA-NH2.1: 38 residues within 4Å: Chain A: Y.31, W.38, M.48, L.49, G.50, Y.52, I.55, C.86, G.87, A.88, G.89, R.92, I.93, V.108, D.109, I.110, T.111, F.114, C.135, G.136, L.137, Q.138, Q.153, W.154, V.155, H.158, L.159, N.186, Q.189, I.193, D.195, D.198, S.200, D.230, E.231, I.232, Y.233, V.235 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:Y.52, A:I.55, A:W.154, A:W.154, A:E.231, A:I.232, A:Y.233, A:Y.233 Hydrogen bonds: A:G.87, A:G.89, A:I.110, A:T.111, A:T.111, A:L.137, A:Q.138, A:N.186, A:D.195, A:E.231, A:Y.233, A:Y.233 Water bridges: A:Q.153, A:N.186, A:Q.189 Salt bridges: A:R.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, D. et al., Discovery of Bisubstrate Inhibitors for Protein N-Terminal Methyltransferase 1. J. Med. Chem. (2019)

Release Date

2019-04-03

Peptides

N-terminal Xaa-Pro-Lys N-methyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

N-terminal Xaa-Pro-Lys N-methyltransferase 1

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