SMTL ID : 6dwy.1

Hermes transposase deletion dimer complex with (C/G) DNA and Ca2+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x DG- DC- DG- DT- DG- DA- DC: DNA (5'-D(*C*GP*CP*GP*TP*GP*AP*C)-3')(Non-covalent)

DG-DC-DG-DT-DG-DA-DC.1: 14 residues within 4Å: Chain A: D.173, R.174, G.175, A.176, H.193, N.197 Chain C: G.18, T.20, C.21, A.22, C.23, G.24, C.25 Ligands: CA.2 Protein-ligand interaction information (PLIP) not available DG-DC-DG-DT-DG-DA-DC.3: 14 residues within 4Å: Chain D: D.173, R.174, G.175, A.176, H.193, N.197 Chain F: G.18, T.20, C.21, A.22, C.23, G.24, C.25 Ligands: CA.4 Protein-ligand interaction information (PLIP) not available

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.105, D.173 Chain C: G.18 Ligands: DG-DC-DG-DT-DG-DA-DC.1 No protein-ligand interaction detected (PLIP) CA.4: 4 residues within 4Å: Chain D: D.105, D.173 Chain F: G.18 Ligands: DG-DC-DG-DT-DG-DA-DC.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hickman, A.B. et al., Structural insights into the mechanism of double strand break formation by Hermes, a hAT family eukaryotic DNA transposase. Nucleic Acids Res. (2018)

Release Date

2018-09-19

Peptides

Hermes transposase: AD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

Hermes transposase

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