- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x OS2: (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(prop-2-yn-1-yl)sulfanyl]methyl}pyrrolidin-3-ol(Non-covalent)
OS2.9: 22 residues within 4Å:- Chain A: A.24, M.25, I.67, V.93, A.94, G.95, Q.167, F.168, V.169, V.187, E.188, M.189, E.190, S.212, D.213, A.215, F.223
- Chain B: L.119, F.122, H.124, P.130
- Ligands: EDO.7
10 PLIP interactions:7 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:I.67, B:L.119, B:F.122, B:P.130
- Hydrogen bonds: A:V.169, A:E.190, A:D.213, A:D.213
- Salt bridges: A:E.28, A:E.190
OS2.19: 22 residues within 4Å:- Chain A: L.119, F.122, H.124, P.130
- Chain B: A.24, M.25, I.67, V.93, A.94, G.95, Q.167, F.168, V.169, V.187, E.188, M.189, E.190, S.212, D.213, A.215, F.223
- Ligands: EDO.17
11 PLIP interactions:8 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:I.67, A:L.119, A:F.122, A:P.130
- Hydrogen bonds: B:V.169, B:E.190, B:D.213, B:D.213
- Water bridges: B:R.209
- Salt bridges: B:E.28, B:E.190
- 2 x NH4: AMMONIUM ION(Non-functional Binders)
NH4.10: 7 residues within 4Å:- Chain A: K.69, D.116, D.166
- Chain B: K.69, D.116, D.166
- Ligands: NH4.20
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:K.69, B:K.69, A:K.69, A:D.166
NH4.20: 7 residues within 4Å:- Chain A: K.69, D.116, D.166
- Chain B: K.69, D.116, D.166
- Ligands: NH4.10
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:K.69, A:K.69, A:K.69, A:D.166
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Harijan, R.K. et al., Selective Inhibitors of Helicobacter pylori Methylthioadenosine Nucleosidase and Human Methylthioadenosine Phosphorylase. J. Med. Chem. (2019)
- Release Date
- 2019-03-20
- Peptides
- 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x OS2: (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(prop-2-yn-1-yl)sulfanyl]methyl}pyrrolidin-3-ol(Non-covalent)
- 2 x NH4: AMMONIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Harijan, R.K. et al., Selective Inhibitors of Helicobacter pylori Methylthioadenosine Nucleosidase and Human Methylthioadenosine Phosphorylase. J. Med. Chem. (2019)
- Release Date
- 2019-03-20
- Peptides
- 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B